Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015926445.1_cds_XP_016474444.1_66469
CDS Infomation

[gene=LOC107796215] [db_xref=GeneID:107796215] [protein=ATP-dependent zinc metalloprotease FTSH, chloroplastic] [partial=5'] [protein_id=XP_016474444.1] [location=join(<6..32,389..574,661..747,826..939,1076..1200,1291..1399,2986..3111,4750..5070,5432..5555,5987..6114)] [gbkey=CDS]
Sequence

GCACGTCCTCCTCGTGGTGTTCTACTGGTAGGTCTTCCCGGGACAGGAAAAACACTTCTA
GCTAAGGCCGTCGCTGGGGAAGCTGAGGTTCCTTTCATCAGTTGTTCTGCAAGTGAGTTT
GTAGAATTGTATGTCGGTATGGGAGCATCACGTGTCCGGGACCTGTTTGCACGGGCAAAG
AAGGAGGCACCTTCAATAATTTTTATCGATGAGATAGATGCTGTGGCAAAAAGCCGTGAT
GGTAAATTCCGCATCGTAAGCAATGATGAAAGAGAGCAGACACTGAACCAACTACTCACT
GAGATGGATGGATTTGACAGTAATTCTGCTGTAATTGTCCTTGGAGCAACAAATCGCTCT
GATGTTTTAGACCCTGCTCTTCGCCGACCTGGAAGATTTGATCGTGTAGTGATGGTGGAA
GCGCCTGATAGGGCTGGAAGAGAAGCTATCCTAAAGGTACATGTCTCCAAGAAAGAACTT
CCCCTGGCACAAGATGTTAATCTTGGTAACATCGCTTCTATGACTACTGGTTTCACGGGG
GCAGACCTTGCAAATCTAGTGAATGAAGCTGCTTTGTTGGCAGGAAGGCAGAATAAAGTT
GTAGTTGAAAAAGAAGATTTCATTCAAGCTGTTGAGCGTTCAATTGCGGGCATTGAGAAG
AAGACTGCCAAGCTGCAGGGCAGTGAGAAGGCTGTAGTTGCAAGGCATGAAGCAGGTCAT
GCAGTAGTTGGGACTGCTGTTGCAAATCTTCTTTCTGGGCAGCCACGGGTTGAGAAGCTA
AGCATATTGCCGAGATCTGGAGGGGCTTTAGGATTTACTTATATTCCTCCAACCAATGAG
GACAGATATCTGCTATTTGTTGATGAGTTACGGGGAAGATTGGTCACTCTTCTTGGTGGA
CGTGCAGCGGAAGAAGTCTTGTACTCTGGACGTGTATCTACAGGTGCTCTTGACGATATA
CACAGAGCAACAGACATGGCCTACAAGGCAGTGGCTGAATATGGTCTTAATGAAACCATT
GGCCCTATTTCAGTGGCAACTCTTTCCGCTGGTGGAATGGATGATAGTGGATCCATGCCC
TGGGGAAGGGATCAGGGGCATCTTGTTGATCTTGTCCAAAGAGAGGTCAAGGCCTTACTA
CAGTCTGCACTTGATATTGCACTTTGTGTTGTACGTGCTAATCCCACAGTTCTTGAGGGG
TTGGGAGCTCAATTGGAAGAGAAAGAGAAAGTAGAAGGTGAAGAACTACAAGAATGGTTG
AGCATGGTCGTTGCACCGGCGGAACTTAACTTTTTTGTTAAGGGCAAGCAAGAGTCTTTA
CTTCCATTGCAAGCAAGCTCTGGATGA

Peptide Sequence

PEP ID

XP_016474444.1
PEP Infomation

PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic, partial [Nicotiana tabacum]
Sequence

ARPPRGVLLVGLPGTGKTLLAKAVAGEAEVPFISCSASEFVELYVGMGASRVRDLFARAK
KEAPSIIFIDEIDAVAKSRDGKFRIVSNDEREQTLNQLLTEMDGFDSNSAVIVLGATNRS
DVLDPALRRPGRFDRVVMVEAPDRAGREAILKVHVSKKELPLAQDVNLGNIASMTTGFTG
ADLANLVNEAALLAGRQNKVVVEKEDFIQAVERSIAGIEKKTAKLQGSEKAVVARHEAGH
AVVGTAVANLLSGQPRVEKLSILPRSGGALGFTYIPPTNEDRYLLFVDELRGRLVTLLGG
RAAEEVLYSGRVSTGALDDIHRATDMAYKAVAEYGLNETIGPISVATLSAGGMDDSGSMP
WGRDQGHLVDLVQREVKALLQSALDIALCVVRANPTVLEGLGAQLEEKEKVEGEELQEWL
SMVVAPAELNFFVKGKQESLLPLQASSG

Transcript Sequence

Gene sequence data has not been registered.